Publications

Publications

  • Bais, P. Moon, S. M. He, K. Leitao, R. Dreher, K. Walk, T. Sucaet, Y. Barkan, L. Wohlgemuth, G. Roth, M. R. Wurtele, E. S. Dixon, P. Fiehn, O. Lange, B. M. Shulaev, V. Sumner, L. W. Welti, R. Nikolau, B. J. Rhee, S. Y. Dickerson, J. A., "PlantMetabolomics.org: a web portal for plant metabolomics experiments". Plant Physiology, p. 1807, vol. 152, (2010). Published, pp.109.151027 [pii] 10.1104/pp.109.151027
  • Lee I, Ambaru B, Thakkar P, Marcotte EM, Rhee SY., "Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana" Nature Biotechnology, p. 149, vol. 28, (2010). Published, nbt.1603 [pii] 10.1038/nbt.1603
  • Abate S, Ahn YG, Kind T, Cataldi TRI, Fiehn O., "Determination of elemental compositions by gas chromatography - time of flight mass spectrometry comparing chemical and electron ionization" Rapid Communication Mass Spectrometry., p. , vol. , (2010). Accepted
  • SM Moon, P Bais, K He, JA Dickerson, P Dixon, G Wohlgemuth, O Fiehn, L Barkan, I Lange, BM Lange, D Cortes, J Shuman, V Shulaev, DV. Huhman, LW Sumner, MR Roth, R Welti, H Ilarslan, ES Wurtele, L Brachova, AA Campbell, SY Rhee and BJ Nikolau, "Metabolomics as a hypothesis-generating functional genomics tool for the annotation of Arabidopsis thaliana genes of unknown function" Plant Journal, p., vol. , (2010). Submitted
  • LW Sumner "Recent advances in plant metabolomics and greener pastures" Faculty 1000 Reports , p. , vol. 2:7, (2010). Published,10.3410/B2-7
  • Shulaev, V., Cortes, D., Miller, G., Mittler, R. (2008). Metabolomics for plant stress response. Physiol. Plant. 132. 199-208 Synergy
  • Nikolau BJ, and Wurtele ES, eds 2007 Concepts in Plant Metabolomics. . Springer Verlag, ISBN: 978-1-4020-5607-9
  • Fiehn O., Sumner L.W., Rhee S.Y., Ward J., Dickerson J., Lange B.M.,Lane G., Roessner U., Last R., Nikolau B. (2007); Minimum reporting standards for plant biology context information in metabolomic studies. Metabolomics 3, 195-201.
  • Rios-Estepa R., Lange B.M. (2007); Experimental and mathematicalapproaches to modeling plant metabolic networks. Phytochemistry 68,2351-2374
  • Isaac, Giorgis, Jeannotte, Richard, Esch, Steven Wynn, and Welti, Ruth. 2007. New mass-spectrometry-based strategies for lipids, Gen. Eng. Rev. Vol. 28. 28, 129-157. Pubmed
  • Welti, Ruth, Shah, Jyoti, Li, Weiqi, Li, Maoyin, Chen, Junping, Burke, John J., Fauconnier, Marie-Laure, Chapman, Kent, Chye, Mee-Len, and Wang, Xuemin. 2007. Plant lipidomics: Discerning biological function by profiling plant complex lipids using mass spectrometry. Frontiers in Bioscience. 12, 2494-2506. PubMed
  • Bajad, S., Shulaev, V. (2007) Highly-parallel metabolomics approaches using LC-MS2 for pharmaceutical and environmental analysis. Trends in Analytical Chemistry 26, 625-636 Download
  • Lange B.M. (2006); Integrative analysis of metabolic networks: from peaks to flux models? Curr. Op. Plant Biol. 9, 220-226.
  • Welti, Ruth, Isaac, Giorgis, Tamura, Pamela, Esch, Steven Wynn, Sparks, Alexis, Jeannotte, Richard, Roth, Mary, Maatta, Sara, Williams, Todd D., Shah, Jyoti, and Wang, Xuemin. 2007. Lipid profiling: Analysis of gene function and physiological responses in Arabidopsis. Proceedings of the 17th International Symposium on Plant Lipids. Eds. Benning, Christoph and Ohlrogge, John. pp. 287-291.
  • Buseman, Christen M., Tamura, Pamela, Sparks, Alexis A., Baughman, Ethan J., Maatta, Sara, Zhao, Jian, Roth, Mary R., Esch, Steven Wynn, Shah, Jyoti, Williams, Todd D., and Welti, Ruth 2006. Wounding stimulates the accumulation of glycerolipids containing oxophytodienoic acid and dinor-oxophytodienoic acid in Arabidopsis leaves. Plant Physiol. 142, 28-39.
  • Shulaev, V. (2006) Metabolomics technology and bioinformatics. Brief Bioinform. 7, 128-39. PubMed
  • Bino RJ, Hall RD, Fiehn O, Kopka J, Saito K, Draper J, Nikolau BJ, Mendes P, Roessner-Tunali U, Beale MH, et al (2004) Potential of metabolomics as a functional genomics tool. Trends Plant Sci 9: 418-425 [PubMed]
  • Jenkins H, Hardy N, Beckmann M, Draper J, Smith AR, Taylor J, Fiehn O, Goodacre R, Bino RJ, Hall R, et al (2004) A proposed framework for the description of plant metabolomics experiments and their results. Nat Biotechnol 22: 1601-1606 [PubMed]

Presentations

  • Dr. Basil J. Nikolau National Plant Lipid Symposium,Lake Tahoe, CA,June, 2008 [pdf]
  • Dr. Basil J. Nikolau Metabolomics Workshop at the 18th International Conference of Arabidopsis Research, Beijing, China, June, 2007 [pdf]
  • Stephanie Moon Metabolomics Meeting at Noble Foundation , Nov 2007 [pdf]
  • Dr. Lloyd W Sumner Metabolomics Meeting at Noble Foundation , Nov 2007 [pdf]
  • Dr. B. Markus Lange Metabolomics Meeting at Noble Foundation , Nov 2007 [pdf]
  • Dr. Julie Dickerson Metabolomics Meeting at Noble Foundation , Nov 2007 [pdf]
  • Stephanie Moon Metabolomics based annotation of novel genes in Arabidopsis thaliana Selected Talk at 5th International Conference on Plant Metabolomics in July 2008 in Yokohama, Japan [Presentation] , [Abstract]

Posters